ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4c3oB1 - ECOD Domain | ECOD

ECOD/Domains/e4c3oB1

e4c3oB1

UID: 001140747

PDB

Range: B:4-182
PDB: 4C3O chain B(all domains)
UniProt: Q8ZPG9 (all domains)
Gene: STM1539

Molecule: HYDROGENASE-1 SMALL SUBUNIT

3D Structure

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Related Domains

Browse other domains in Oxidored_q6 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupCheY-like(2007.1.3)

FFamilyOxidored_q6(2007.1.3.3)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
FE4-S3 CLUSTERF4S
FE3-S4 CLUSTERF3S
within 5 Å only

Pfam Families

PF01058Oxidored_q6

NADH ubiquinone oxidoreductase, 20 Kd subunit

ClanCL0304CheY

External Links

ECOD PDB View: 4C3O RCSB PDB: 4C3O PDBe: 4C3O UniProt: Q8ZPG9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.