ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4oakB1 - ECOD Domain | ECOD

ECOD/Domains/e4oakB1

e4oakB1

UID: 001140897

PDB

Range: B:1-190
PDB: 4OAK chain B(all domains)
UniProt: Q9JN36 (all domains)
Gene: vanXYC

Molecule: D,D-dipeptidase/D,D-carboxypeptidase

3D Structure

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Related Domains

Browse other domains in VanY →

Classification

AArchitecturea+b two layers(a.11)

XX-groupHedgehog/DD-peptidase(307)

HH-groupHedgehog/DD-peptidase(307.1)

TT-groupHedgehog/DD-peptidase(307.1.1)

FFamilyVanY(307.1.1.3)

Ligands

in contact, ≤ 4 Å

D-AlanineDAL
drugDrugBank DB01786
Chloride ionCL
COPPER (II) IONCU

Pfam Families

D-alanyl-D-alanine carboxypeptidase

ClanCL0170Peptidase_MD

External Links

ECOD PDB View: 4OAK RCSB PDB: 4OAK PDBe: 4OAK UniProt: Q9JN36

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Magnesium ionMG

metal

+ 2 additives (Sulfate ion, 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL)

Sulfate ionSO4
DrugBank DB14546
3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOLPE3

Shown in the structure viewer. Drug annotations from DrugDomain.