ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ayfA2 - ECOD Domain | ECOD

ECOD/Domains/e3ayfA2

e3ayfA2

UID: 001141887

RepresentativePDB

Range: A:246-777
PDB: 3AYF chain A(all domains)
UniProt: B3Y963 (all domains)
Gene: norZ

Molecule: Nitric oxide reductase

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Calcium ionCA
metal
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 3AYF RCSB PDB: 3AYF PDBe: 3AYF UniProt: B3Y963

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Zinc ionZN

metal

+ 2 additives (HEPES, octyl beta-D-glucopyranoside)

HEPESEPE
DrugBank DB16872
octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.