ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ivpB2 - ECOD Domain | ECOD

ECOD/Domains/e3ivpB2

e3ivpB2

UID: 001141920

PDB

Range: B:77-115
PDB: 3IVP chain B(all domains)
UniProt: Q180H4 (all domains)
Gene: CD630_33300

Molecule: Putative transposon-related DNA-binding protein

3D Structure

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Related Domains

Browse other domains in DBD_HTH →

Classification

AArchitecturealpha duplicates or obligate multimers(a.8)

XX-groupPutative transposon-related DNA-binding protein dimerization domain(3287)

HH-groupPutative transposon-related DNA-binding protein dimerization domain(3287.1)

TT-groupPutative transposon-related DNA-binding protein dimerization domain(3287.1.1)

FFamilyDBD_HTH(3287.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Tetraethylene glycol)

Tetraethylene glycolPG4
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF18430DBD_HTH

Putative DNA-binding domain

ClanCL0123HTH

External Links

ECOD PDB View: 3IVP RCSB PDB: 3IVP PDBe: 3IVP UniProt: Q180H4

Downloads

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