ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1dfmB1 - ECOD Domain | ECOD

ECOD/Domains/e1dfmB1

e1dfmB1

UID: 000114233

PDB

Range: B:1-223
PDB: 1DFM chain B(all domains)
UniProt: Q45488 (all domains)
Gene: bglIIR

Molecule: ENDONUCLEASE BGLII

3D Structure

Loading viewer...

Related Domains

Browse other domains in Endonuc-BglII →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-groupRestriction endonuclease-like(2008.1)

TT-groupRestriction endonuclease-like(2008.1.1)

FFamilyEndonuc-BglII(2008.1.1.39)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09195Endonuc-BglII

Restriction endonuclease BglII/BglIII

ClanCL0236PDDEXK

External Links

ECOD PDB View: 1DFM RCSB PDB: 1DFM PDBe: 1DFM UniProt: Q45488

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure