ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lj3B1 - ECOD Domain | ECOD

ECOD/Domains/e4lj3B1

e4lj3B1

UID: 001142863

PDB

Range: B:104-359
PDB: 4LJ3 chain B(all domains)
UniProt: P21514 (all domains)
Gene: pdeL

Molecule: Cyclic di-GMP phosphodiesterase YahA

3D Structure

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Related Domains

Browse other domains in EAL →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupEAL domain(2002.5)

TT-groupEAL domain(2002.5.1)

FFamilyEAL(2002.5.1.1)

Ligands

in contact, ≤ 4 Å

9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)C2E
Calcium ionCA
metal
trans-4-(hydroxymethyl)cyclohexanol

Pfam Families

EAL domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 4LJ3 RCSB PDB: 4LJ3 PDBe: 4LJ3 UniProt: P21514

Downloads

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+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.