ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4lykC1 - ECOD Domain | ECOD

ECOD/Domains/e4lykC1

e4lykC1

UID: 001142971

PDB

Range: C:107-358
PDB: 4LYK chain C(all domains)
UniProt: P21514 (all domains)
Gene: pdeL

Molecule: Cyclic di-GMP phosphodiesterase YahA

3D Structure

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Related Domains

Browse other domains in EAL →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupEAL domain(2002.5)

TT-groupEAL domain(2002.5.1)

FFamilyEAL(2002.5.1.1)

Ligands

in contact, ≤ 4 Å

trans-4-(hydroxymethyl)cyclohexanolHB0
Magnesium ionMG
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

EAL domain

ClanCL0276Nucleot_cyclase

External Links

ECOD PDB View: 4LYK RCSB PDB: 4LYK PDBe: 4LYK UniProt: P21514

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.