ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3zj6B1 - ECOD Domain | ECOD

ECOD/Domains/e3zj6B1

e3zj6B1

UID: 001144106

PDB

Range: B:13-206,B:232-513
PDB: 3ZJ6 chain B(all domains)
UniProt: Q9SPP9 (all domains)
Gene: RG

Molecule: RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_1 →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyGlyco_hydro_1(2002.1.1.12)

Ligands

in contact, ≤ 4 Å

(1R,2S,3S,4R,5R)-4-(cyclohexylmethylamino)-5-(hydroxymethyl)cyclopentane-1,2,3-triolVM2

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00232Glyco_hydro_1

Glycosyl hydrolase family 1

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3ZJ6 RCSB PDB: 3ZJ6 PDBe: 3ZJ6 UniProt: Q9SPP9

Downloads

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