ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kisD2 - ECOD Domain | ECOD

ECOD/Domains/e4kisD2

e4kisD2

UID: 001145763

RepresentativePDB

Range: D:263-358,D:386-460
PDB: 4KIS chain D(all domains)
UniProt: Q928V6 (all domains)
Gene: int

Molecule: Putative integrase [Bacteriophage A118]

3D Structure

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Related Domains

Browse other domains in Zn_ribbon_recom →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupZinc-nucleated domain of serine integrase(375.1.9)

FFamilyZn_ribbon_recom(375.1.9.1)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal
Calcium ionCA
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13408Zn_ribbon_recom

Recombinase zinc beta ribbon domain

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 4KIS RCSB PDB: 4KIS PDBe: 4KIS UniProt: Q928V6

Downloads

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