ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4kqgA1 - ECOD Domain | ECOD

ECOD/Domains/e4kqgA1

e4kqgA1

UID: 001146237

PDB

Range: A:3-349
PDB: 4KQG chain A(all domains)
UniProt: Q05603 (all domains)
Gene: cobT

Molecule: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase

3D Structure

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Related Domains

Browse other domains in DBI_PRT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)(7553)

HH-groupNicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)(7553.1)

TT-groupNicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)(7553.1.1)

FFamilyDBI_PRT(7553.1.1.1)

Ligands

in contact, ≤ 4 Å

5,6-DimethylbenzimidazoleDMD
drugDrugBank DB02591

+ 2 additives (Phosphate ion, 1,2-ETHANEDIOL)

Phosphate ionPO4
DrugBank DB14523

Pfam Families

PF02277DBI_PRT

Phosphoribosyltransferase

External Links

ECOD PDB View: 4KQG RCSB PDB: 4KQG PDBe: 4KQG UniProt: Q05603

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.