ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4nd6A1 - ECOD Domain | ECOD

ECOD/Domains/e4nd6A1

e4nd6A1

UID: 001147634

PDB

Range: A:1-306
PDB: 4ND6 chain A(all domains)
UniProt: Q57834 (all domains)
Gene: tyrS

Molecule: Tyrosine-tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 4ND6 RCSB PDB: 4ND6 PDBe: 4ND6 UniProt: Q57834

Downloads

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