ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3kq4A1 - ECOD Domain | ECOD

ECOD/Domains/e3kq4A1

e3kq4A1

UID: 001147789

RepresentativePDB

Range: A:25-299
PDB: 3KQ4 chain A(all domains)
UniProt: P27352 (all domains)
Gene: CBLIF

Molecule: Gastric intrinsic factor

3D Structure

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Related Domains

Browse other domains in Cobalamin_bind →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyCobalamin_bind(109.2.1.4)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
CobalaminB12
Calcium ionCA

Pfam Families

PF01122Cobalamin_bind

Eukaryotic cobalamin-binding protein

ClanCL00596_Hairpin

External Links

ECOD PDB View: 3KQ4 RCSB PDB: 3KQ4 PDBe: 3KQ4 UniProt: P27352

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.