ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1b92A1 - ECOD Domain | ECOD

ECOD/Domains/e1b92A1

e1b92A1

UID: 000114986

PDB

Range: A:56-209
PDB: 1B92 chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: PROTEIN (INTEGRASE)

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Sulfate ion, Cacodylate ion)

Sulfate ionSO4
DrugBank DB14546
Cacodylate ionCAC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 1B92 RCSB PDB: 1B92 PDBe: 1B92 UniProt: P12497

Downloads

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