ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ahtA2 - ECOD Domain | ECOD

ECOD/Domains/e4ahtA2

e4ahtA2

UID: 001149923

PDB

Range: A:56-209
PDB: 4AHT chain A(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: INTEGRASE

3D Structure

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Related Domains

Browse other domains in rve →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237
1,3-benzodioxole-4-carboxylic acidQ6T

+ 3 additives (Acetic acid, Sulfate ion, 1,2-ETHANEDIOL)

Acetic acid

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 4AHT RCSB PDB: 4AHT PDBe: 4AHT UniProt: P12497

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

Sulfate ionSO4

DrugBank DB14546

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.