ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qs4C1 - ECOD Domain | ECOD

ECOD/Domains/e1qs4C1

e1qs4C1

UID: 000114993

PDB

Range: C:56-209
PDB: 1QS4 chain C(all domains)
UniProt: P12497 (all domains)
Gene: gag-pol

Molecule: PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49))

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 1QS4 RCSB PDB: 1QS4 PDBe: 1QS4 UniProt: P12497

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