ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2idoC1 - ECOD Domain | ECOD

ECOD/Domains/e2idoC1

e2idoC1

UID: 000115140

PDB

Range: C:7-180
PDB: 2IDO chain C(all domains)
UniProt: P03007 (all domains)
Gene: dnaQ

Molecule: DNA polymerase III epsilon subunit

3D Structure

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Related Domains

Browse other domains in RNase_T →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_T(2484.1.1.13)

Ligands

in contact, ≤ 4 Å

Thymidine monophosphateTMP
drugDrugBank DB01643
MANGANESE (II) IONMN
metal

+ 1 additive (1,2-ETHANEDIOL)

Pfam Families

PF00929RNase_T

Exonuclease

ClanCL0219RNase_H

External Links

ECOD PDB View: 2IDO RCSB PDB: 2IDO PDBe: 2IDO UniProt: P03007

Downloads

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1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.