ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1mdxA2 - ECOD Domain | ECOD

ECOD/Domains/e1mdxA2

e1mdxA2

UID: 001152490

PDB

Range: A:9-248
PDB: 1MDX chain A(all domains)
UniProt: Q8ZNF3 (all domains)
Gene: arnB

Molecule: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyDegT_DnrJ_EryC1(7577.1.1.6)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 1MDX RCSB PDB: 1MDX PDBe: 1MDX UniProt: Q8ZNF3

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.