ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1mdxA3 - ECOD Domain | ECOD

ECOD/Domains/e1mdxA3

e1mdxA3

UID: 001152491

PDB

Range: A:249-384
PDB: 1MDX chain A(all domains)
UniProt: Q8ZNF3 (all domains)
Gene: arnB

Molecule: UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

3D Structure

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Related Domains

Browse other domains in DegT_DnrJ_EryC1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupC-terminal domain in some PLP-dependent transferases(3016)

HH-groupC-terminal domain in some PLP-dependent transferases(3016.1)

TT-groupC-terminal domain in some PLP-dependent transferases(3016.1.1)

FFamilyDegT_DnrJ_EryC1(3016.1.1.6)

Ligands

in contact, ≤ 4 Å

Oxogluric acidAKG
drugDrugBank DB08845within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01041DegT_DnrJ_EryC1

DegT/DnrJ/EryC1/StrS aminotransferase family

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 1MDX RCSB PDB: 1MDX PDBe: 1MDX UniProt: Q8ZNF3

Downloads

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