ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pgyB3 - ECOD Domain | ECOD

ECOD/Domains/e3pgyB3

e3pgyB3

UID: 001152691

PDB

Range: B:1-275
PDB: 3PGY chain B(all domains)
UniProt: Q5HE87 (all domains)
Gene: glyA

Molecule: Serine hydroxymethyltransferase

3D Structure

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Related Domains

Browse other domains in SHMT →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilySHMT(7577.1.1.5)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer.

Pfam Families

Serine hydroxymethyltransferase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 3PGY RCSB PDB: 3PGY PDBe: 3PGY UniProt: Q5HE87

Downloads

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Drug annotations from DrugDomain.