ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3ty9C2 - ECOD Domain | ECOD

ECOD/Domains/e3ty9C2

e3ty9C2

UID: 001154989

PDB

Range: C:478-870
PDB: 3TY9 chain C(all domains)
UniProt: A3DJ38 (all domains)
Gene: Cthe_2768

Molecule: Polynucleotide 2',3'-cyclic phosphate phosphodiesterase / polynucleotide 5'-hydroxyl-kinase / polynucleotide 3'-phosphatase

3D Structure

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Related Domains

Browse other domains in PNKP_ligase →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyPNKP_ligase(206.1.3.28)

Ligands

in contact, ≤ 4 Å

Adenosine phosphateAMP
drugDrugBank DB00131
Magnesium ionMG
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF16542PNKP_ligase

PNKP adenylyltransferase domain, ligase domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3TY9 RCSB PDB: 3TY9 PDBe: 3TY9 UniProt: A3DJ38

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.