ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3u24A4 - ECOD Domain | ECOD

ECOD/Domains/e3u24A4

e3u24A4

UID: 001159558

PDB

Range: A:39-591
PDB: 3U24 chain A(all domains)
UniProt: Q8EE20 (all domains)
Gene: SO_2570

Molecule: putative Lipoprotein

3D Structure

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Related Domains

Browse other domains in DUF885 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyDUF885(2498.1.1.28)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Zinc ionZN
metal

+ 3 additives (Acetic acid, Imidazole, 1,2-ETHANEDIOL)

Acetic acid

Pfam Families

Bacterial protein of unknown function (DUF885)

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 3U24 RCSB PDB: 3U24 PDBe: 3U24 UniProt: Q8EE20

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03166

ImidazoleIMD

DrugBank DB03366

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.