ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4gsrA4 - ECOD Domain | ECOD

ECOD/Domains/e4gsrA4

e4gsrA4

UID: 001162659

PDB

Range: A:251-408
PDB: 4GSR chain A(all domains)
UniProt: O53223 (all domains)
Gene: ldtB

Molecule: Probable conserved lipoprotein LPPS

3D Structure

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Related Domains

Browse other domains in YkuD →

Classification

AArchitecturebeta complex topology(a.5)

XX-groupL,D-transpeptidase catalytic domain-like(4091)

HH-groupL,D-transpeptidase catalytic domain-like(4091.1)

TT-groupL,D-transpeptidase catalytic domain-like(4091.1.1)

FFamilyYkuD(4091.1.1.1)

Ligands

in contact, ≤ 4 Å

Ethylmercurithiosalicylic acidEMT
drugDrugBank DB02731

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

L,D-transpeptidase catalytic domain

ClanCL0508YkuD

External Links

ECOD PDB View: 4GSR RCSB PDB: 4GSR PDBe: 4GSR UniProt: O53223

Downloads

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Drug annotations from DrugDomain.