ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3q1kB4 - ECOD Domain | ECOD

ECOD/Domains/e3q1kB4

e3q1kB4

UID: 001164564

PDB

Range: B:2-139
PDB: 3Q1K chain B(all domains)
UniProt: P0A1F0 (all domains)
Gene: ddlA

Molecule: D-alanine--D-alanine ligase A

3D Structure

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Related Domains

Browse other domains in Dala_Dala_lig_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupPreATP-grasp domain(2003.1.10)

FFamilyDala_Dala_lig_N(2003.1.10.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Glycerin, Formic acid)

GlycerinGOL
DrugBank DB09462
Formic acidFMT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01820Dala_Dala_lig_N

D-ala D-ala ligase N-terminus

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3Q1K RCSB PDB: 3Q1K PDBe: 3Q1K UniProt: P0A1F0

Downloads

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