ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3vmmA4 - ECOD Domain | ECOD

ECOD/Domains/e3vmmA4

e3vmmA4

UID: 001164578

RepresentativePDB

Range: A:137-472
PDB: 3VMM chain A(all domains)
UniProt: P39641 (all domains)
Gene: bacD

Molecule: Alanine-anticapsin ligase BacD

3D Structure

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Related Domains

Browse other domains in ATP-grasp_4 →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupProtein kinase/SAICAR synthase/ATP-grasp(206)

HH-groupProtein kinase/SAICAR synthase/ATP-grasp(206.1)

TT-groupATP-grasp(206.1.3)

FFamilyATP-grasp_4(206.1.3.25)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833
Magnesium ionMG
metal
(2S)-3-[(S)-[(1R)-1-aminoethyl](phosphonooxy)phosphoryl]-2-benzylpropanoic acid

Pfam Families

PF13535ATP-grasp_4

ATP-grasp domain

ClanCL0179ATP-grasp

External Links

ECOD PDB View: 3VMM RCSB PDB: 3VMM PDBe: 3VMM UniProt: P39641

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.