ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nkgA1 - ECOD Domain | ECOD

ECOD/Domains/e1nkgA1

e1nkgA1

UID: 000001167

RepresentativePDB

Range: A:338-508
PDB: 1NKG chain A(all domains)
UniProt: Q00019 (all domains)
Gene: rglA

Molecule: Rhamnogalacturonase B

3D Structure

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Related Domains

Browse other domains in CBM-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupGalactose-binding domain-like(10.32)

TT-groupGalactose-binding domain-like(10.32.1)

FFamilyCBM-like(10.32.1.44)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF14683CBM-like

Polysaccharide lyase family 4, domain III

ClanCL0202GBD

External Links

ECOD PDB View: 1NKG RCSB PDB: 1NKG PDBe: 1NKG UniProt: Q00019

Downloads

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