ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4ifvB5 - ECOD Domain | ECOD

ECOD/Domains/e4ifvB5

e4ifvB5

UID: 001168420

PDB

Range: B:5-230
PDB: 4IFV chain B(all domains)
UniProt: P03366 (all domains)
Gene: gag-pol

Molecule: Gag-Pol polyprotein

3D Structure

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Related Domains

Browse other domains in RVT_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48)

TT-groupAdenylyl and guanylyl cyclase catalytic domain-like(304.48.1)

FFamilyRVT_1(304.48.1.1)

Ligands

in contact, ≤ 4 Å

RilpivirineT27
drugDrugBank DB08864
[1-(4-fluorophenyl)-5-methyl-1H-pyrazol-4-yl]methanolFMQ

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxide

Pfam Families

Reverse transcriptase (RNA-dependent DNA polymerase)

ClanCL0027RdRP

External Links

ECOD PDB View: 4IFV RCSB PDB: 4IFV PDBe: 4IFV UniProt: P03366

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.