ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1tkdA7 - ECOD Domain | ECOD

ECOD/Domains/e1tkdA7

e1tkdA7

UID: 001168779

PDB

Range: A:1-210
PDB: 1TKD chain A(all domains)
UniProt: P00581 (all domains)
Gene: 5

Molecule: DNA polymerase

3D Structure

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Related Domains

Browse other domains in RNase_H_2 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyRNase_H_2(2484.1.1.68)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

+ 3 additives (2-(N-morpholino)ethanesulfonic acid, Pentaethylene glycol, Sulfate ion)

2-(N-morpholino)ethanesulfonic acidMES
DrugBank DB03814

Pfam Families

PF13482RNase_H_2

RNase_H superfamily

ClanCL0219RNase_H

External Links

ECOD PDB View: 1TKD RCSB PDB: 1TKD PDBe: 1TKD UniProt: P00581

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Pentaethylene glycol

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.