ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r5mA2 - ECOD Domain | ECOD

ECOD/Domains/e1r5mA2

e1r5mA2

UID: 001169089

PDB

Range: A:146-477,A:498-537
PDB: 1R5M chain A(all domains)
UniProt: P38262 (all domains)
Gene: SIF2

Molecule: SIR4-interacting protein SIF2

3D Structure

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Related Domains

Browse other domains in WD40,ANAPC4_WD40 →

Classification

AArchitecturebeta duplicates or obligate multimers(a.4)

XX-groupbeta-propeller-like(5)

HH-groupbeta-propeller(5.1)

TT-group7-bladed(5.1.4)

FFamilyWD40,ANAPC4_WD40(5.1.4.6)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

WD domain, G-beta repeat

ClanCL0186Beta_propeller

PF12894ANAPC4_WD40

Anaphase-promoting complex subunit 4 WD40 domain

ClanCL0186Beta_propeller

External Links

ECOD PDB View: 1R5M RCSB PDB: 1R5M PDBe: 1R5M UniProt: P38262

Downloads

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