ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3rfaA4 - ECOD Domain | ECOD

ECOD/Domains/e3rfaA4

e3rfaA4

UID: 001170627

PDB

Range: A:79-349
PDB: 3RFA chain A(all domains)
UniProt: P36979 (all domains)
Gene: rlmN

Molecule: Ribosomal RNA large subunit methyltransferase N

3D Structure

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Related Domains

Browse other domains in Radical_SAM →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRadical_SAM(2002.1.1.120)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118
Iron/sulfur clusterSF4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF04055Radical_SAM

Radical SAM superfamily

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 3RFA RCSB PDB: 3RFA PDBe: 3RFA UniProt: P36979

Downloads

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