ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3pvkA3 - ECOD Domain | ECOD

ECOD/Domains/e3pvkA3

e3pvkA3

UID: 001171579

PDB

Range: A:179-341
PDB: 3PVK chain A(all domains)
UniProt: P0CS83 (all domains)
Gene: SAP2

Molecule: Candidapepsin-2

3D Structure

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Related Domains

Browse other domains in Asp →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupacid protease(1.1.1)

FFamilyAsp(1.1.1.1)

Ligands

in contact, ≤ 4 Å

BenzamidineBEN
within 5 Å only

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Eukaryotic aspartyl protease

ClanCL0129Peptidase_AA

External Links

ECOD PDB View: 3PVK RCSB PDB: 3PVK PDBe: 3PVK UniProt: P0CS83

Downloads

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