ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1rg2B1 - ECOD Domain | ECOD

ECOD/Domains/e1rg2B1

e1rg2B1

UID: 000117162

PDB

Range: B:159-350
PDB: 1RG2 chain B(all domains)
UniProt: Q9NUW8 (all domains)
Gene: TDP1

Molecule: Tyrosyl-DNA phosphodiesterase 1

3D Structure

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Related Domains

Browse other domains in Tyr-DNA_phospho →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyTyr-DNA_phospho(300.1.1.3)

Ligands

in contact, ≤ 4 Å

4-(2R-AMINO-1-HYDROXYETHYL)PHENOLOTR
4-(2S-AMINO-1-HYDROXYETHYL)PHENOLOTS
Vanadate ionVO4

Shown in the structure viewer.

Pfam Families

PF06087Tyr-DNA_phospho

Tyrosyl-DNA phosphodiesterase

ClanCL0479PLD

External Links

ECOD PDB View: 1RG2 RCSB PDB: 1RG2 PDBe: 1RG2 UniProt: Q9NUW8

Downloads

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Drug annotations from DrugDomain.