ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1rg1B2 - ECOD Domain | ECOD

ECOD/Domains/e1rg1B2

e1rg1B2

UID: 000117176

PDB

Range: B:351-607
PDB: 1RG1 chain B(all domains)
UniProt: Q9NUW8 (all domains)
Gene: TDP1

Molecule: Tyrosyl-DNA phosphodiesterase 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in Tyr-DNA_phospho →

Classification

AArchitecturea+b three layers(a.12)

XX-groupPhospholipase D/nuclease(300)

HH-groupPhospholipase D/nuclease(300.1)

TT-groupPhospholipase D/nuclease(300.1.1)

FFamilyTyr-DNA_phospho(300.1.1.3)

Ligands

in contact, ≤ 4 Å

4-(2S-AMINO-1-HYDROXYETHYL)PHENOLOTS
Vanadate ionVO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF06087Tyr-DNA_phospho

Tyrosyl-DNA phosphodiesterase

ClanCL0479PLD

External Links

ECOD PDB View: 1RG1 RCSB PDB: 1RG1 PDBe: 1RG1 UniProt: Q9NUW8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure