ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2derB2 - ECOD Domain | ECOD

ECOD/Domains/e2derB2

e2derB2

UID: 001172128

RepresentativePDB

Range: B:4-205
PDB: 2DER chain B(all domains)
UniProt: P25745 (all domains)
Gene: mnmA

Molecule: tRNA-specific 2-thiouridylase mnmA

3D Structure

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Related Domains

Browse other domains in NAD_synthase, tRNA_Me_trans →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilyNAD_synthase, tRNA_Me_trans(2005.1.1.47)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Phosphate ion, Sulfate ion)

Phosphate ionPO4
DrugBank DB14523
Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02540NAD_synthase

NAD synthase

ClanCL0039HUP

PF03054tRNA_Me_trans

tRNA methyl transferase HUP domain

ClanCL0039HUP

External Links

ECOD PDB View: 2DER RCSB PDB: 2DER PDBe: 2DER UniProt: P25745

Downloads

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