ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1xp4B5 - ECOD Domain | ECOD

ECOD/Domains/e1xp4B5

e1xp4B5

UID: 001172517

PDB

Range: B:53-182
PDB: 1XP4 chain B(all domains)
UniProt: Q8DQ99 (all domains)
Gene: dacA

Molecule: D-alanyl-D-alanine carboxypeptidase

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S11(4019.1.1.2)

Ligands

in contact, ≤ 4 Å

Iodide ionIOD
within 5 Å only

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1XP4 RCSB PDB: 1XP4 PDBe: 1XP4 UniProt: Q8DQ99

Downloads

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