ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4dzdA2 - ECOD Domain | ECOD

ECOD/Domains/e4dzdA2

e4dzdA2

UID: 001172741

PDB

Range: A:77-199
PDB: 4DZD chain A(all domains)
UniProt: Q46897 (all domains)
Gene: casE

Molecule: Uncharacterized protein ygcH

3D Structure

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Related Domains

Browse other domains in CRISPR_assoc →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51)

TT-groupCRISPR transcript (pre-crRNA) processing endoribonuclease-related(304.51.1)

FFamilyCRISPR_assoc(304.51.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08798CRISPR_assoc

CRISPR associated protein

ClanCL0362RAMPS-Cas5-like

External Links

ECOD PDB View: 4DZD RCSB PDB: 4DZD PDBe: 4DZD UniProt: Q46897

Downloads

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