ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1apbA2 - ECOD Domain | ECOD

ECOD/Domains/e1apbA2

e1apbA2

UID: 001173153

PDB

Range: A:2-109,A:255-306
PDB: 1APB chain A(all domains)
UniProt: P02924 (all domains)
Gene: araF

Molecule: L-ARABINOSE-BINDING PROTEIN

3D Structure

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Related Domains

Browse other domains in Peripla_BP_1 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupPeriplasmic binding protein-like I(2007.1.2)

FFamilyPeripla_BP_1(2007.1.2.2)

Ligands

in contact, ≤ 4 Å

alpha-D-FucopyranoseFCA
drugDrugBank DB03485within 5 Å only
beta-D-fucoseFCB
drugDrugBank DB04062within 5 Å only

Pfam Families

PF00532Peripla_BP_1

Periplasmic binding proteins and sugar binding domain of LacI family

ClanCL0144Periplas_BP

External Links

ECOD PDB View: 1APB RCSB PDB: 1APB PDBe: 1APB UniProt: P02924

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.