ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4jjpB2 - ECOD Domain | ECOD

ECOD/Domains/e4jjpB2

e4jjpB2

UID: 001173566

PDB

Range: B:6-243
PDB: 4JJP chain B(all domains)
UniProt: Q186F5 (all domains)
Gene: thiD

Molecule: Phosphomethylpyrimidine kinase

3D Structure

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Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 4JJP RCSB PDB: 4JJP PDBe: 4JJP UniProt: Q186F5

Downloads

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