ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3sfgA4 - ECOD Domain | ECOD

ECOD/Domains/e3sfgA4

e3sfgA4

UID: 001174702

PDB

Range: A:388-492
PDB: 3SFG chain A(all domains)
UniProt: Q80J95 (all domains)
Gene: ORF1

Molecule: RNA polymerase

3D Structure

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Related Domains

Browse other domains in RdRP_1 →

Classification

AArchitecturealpha bundles(a.7)

XX-grouphelical bundle domain in reverse transcriptase-like polymerases(4967)

HH-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1)

TT-grouphelical bundle domain in reverse transcriptase-like polymerases(4967.1.1)

FFamilyRdRP_1(4967.1.1.2)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
1-(beta-D-ribofuranosyl)-2-thioxo-2,3-dihydropyrimidin-4(1H)-one2TU
within 5 Å only

+ 2 additives (Sulfate ion, Glycerol)

Pfam Families

Viral RNA-dependent RNA polymerase

ClanCL0027RdRP

External Links

ECOD PDB View: 3SFG RCSB PDB: 3SFG PDBe: 3SFG UniProt: Q80J95

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Sulfate ion

DrugBank DB14546

GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.