ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3zn4A2 - ECOD Domain | ECOD

ECOD/Domains/e3zn4A2

e3zn4A2

UID: 001175317

PDB

Range: A:19-167
PDB: 3ZN4 chain A(all domains)
UniProt: C8CHL4 (all domains)

Molecule: VP16

3D Structure

Loading viewer...

Related Domains

Browse other domains in VP16-like →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyVP16-like(10.2.1.62)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (Citric acid)

Citric acidCIT
DrugBank DB04272

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF22024VP16-like

Major capsid protein VP16-like

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 3ZN4 RCSB PDB: 3ZN4 PDBe: 3ZN4 UniProt: C8CHL4

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure