ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e3nkhA3 - ECOD Domain | ECOD

ECOD/Domains/e3nkhA3

e3nkhA3

UID: 001176183

PDB

Range: A:1-156
PDB: 3NKH chain A(all domains)
UniProt: A8Z1E8 (all domains)

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in Phage_integrase →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHTH(101)

HH-groupHTH(101.1)

TT-groupDNA breaking-rejoining enzymes(101.1.8)

FFamilyPhage_integrase(101.1.8.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 2 additives ((4r)-2-Methylpentane-2,4-Diol, Sulfate ion)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

PF00589Phage_integrase

Phage integrase family

ClanCL0382DNA-mend

External Links

ECOD PDB View: 3NKH RCSB PDB: 3NKH PDBe: 3NKH UniProt: A8Z1E8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Sulfate ionSO4

Shown in the structure viewer. Drug annotations from DrugDomain.