ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2cv8B3 - ECOD Domain | ECOD

ECOD/Domains/e2cv8B3

e2cv8B3

UID: 001176320

PDB

Range: B:85-180
PDB: 2CV8 chain B(all domains)
UniProt: Q975R3 (all domains)
Gene: endA

Molecule: tRNA-splicing endonuclease

3D Structure

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Related Domains

Browse other domains in tRNA_int_endo →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRestriction endonuclease-like(2008)

HH-grouptRNA-intron endonuclease catalytic domain-like(2008.2)

TT-grouptRNA-intron endonuclease catalytic domain-like(2008.2.1)

FFamilytRNA_int_endo(2008.2.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01974tRNA_int_endo

tRNA intron endonuclease, catalytic C-terminal domain

ClanCL0236PDDEXK

External Links

ECOD PDB View: 2CV8 RCSB PDB: 2CV8 PDBe: 2CV8 UniProt: Q975R3

Downloads

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