ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b9kH2 - ECOD Domain | ECOD

ECOD/Domains/e4b9kH2

e4b9kH2

UID: 001177356

PDB

Range: H:17-112
PDB: 4B9K chain H(all domains)
UniProt: Q15369 (all domains)
Gene: ELOC

Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1

3D Structure

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Related Domains

Browse other domains in Skp1_POZ →

Classification

AArchitecturea+b two layers(a.11)

XX-groupPOZ domain(226)

HH-groupPOZ domain(226.1)

TT-groupPOZ domain(226.1.1)

FFamilySkp1_POZ(226.1.1.5)

Ligands

in contact, ≤ 4 Å

(2S,4R)-1-(3-amino-2-methylbenzoyl)-4-hydroxy-N-(4-(4-methylthiazol-5-yl)benzyl)pyrrolidine-2-carboxamideTG0
within 5 Å only

+ 1 additive (Acetate)

AcetateACT
DrugBank DB14511

Shown in the structure viewer.

Pfam Families

PF03931Skp1_POZ

Skp1 family, tetramerisation domain

ClanCL0033POZ

External Links

ECOD PDB View: 4B9K RCSB PDB: 4B9K PDBe: 4B9K UniProt: Q15369

Downloads

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Drug annotations from DrugDomain.