ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2istA1 - ECOD Domain | ECOD

ECOD/Domains/e2istA1

e2istA1

UID: 001177558

PDB

Range: A:73-325
PDB: 2IST chain A(all domains)
UniProt: P33643 (all domains)
Gene: rluD

Molecule: Ribosomal large subunit pseudouridine synthase D

3D Structure

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Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Ligands

in contact, ≤ 4 Å

Chloride ionCL

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 2IST RCSB PDB: 2IST PDBe: 2IST UniProt: P33643

Downloads

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