ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nxjB1 - ECOD Domain | ECOD

ECOD/Domains/e1nxjB1

e1nxjB1

UID: 000117779

PDB

Range: B:3-157
PDB: 1NXJ chain B(all domains)
UniProt: P9WGY3 (all domains)
Gene: rraA

Molecule: Probable S-adenosylmethionine:2-demethylmenaquinone methyltransferase

3D Structure

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Related Domains

Browse other domains in RraA-like →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThe "swivelling" beta/beta/alpha domains(2487)

HH-groupThe "swivelling" beta/beta/alpha domain(2487.1)

TT-groupThe "swivelling" beta/beta/alpha domain(2487.1.1)

FFamilyRraA-like(2487.1.1.8)

Ligands

in contact, ≤ 4 Å

Glyoxylic acidGLV
drugDrugBank DB04343
L-tartaric acidTLA
drugDrugBank DB09459

Shown in the structure viewer. Drug annotations from .

Pfam Families

PF03737RraA-like

Aldolase/RraA

ClanCL0364Leu-IlvD

External Links

ECOD PDB View: 1NXJ RCSB PDB: 1NXJ PDBe: 1NXJ UniProt: P9WGY3

Downloads

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