ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3nkeC2 - ECOD Domain | ECOD

ECOD/Domains/e3nkeC2

e3nkeC2

UID: 001178138

PDB

Range: C:92-281
PDB: 3NKE chain C(all domains)
UniProt: Q46896 (all domains)
Gene: ygbT

Molecule: protein ygbT

3D Structure

Loading viewer...

Related Domains

Browse other domains in Cas_Cas1 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupCas1(3239)

HH-groupCas1(3239.1)

TT-groupCas1(3239.1.1)

FFamilyCas_Cas1(3239.1.1.1)

Ligands

in contact, ≤ 4 Å

Sulfite ionSO3

+ 2 additives (Sulfate ion, 1,2-ETHANEDIOL)

Sulfate ionSO4
DrugBank DB14546
1,2-ETHANEDIOLEDO

Pfam Families

PF01867Cas_Cas1

CRISPR associated protein Cas1

External Links

ECOD PDB View: 3NKE RCSB PDB: 3NKE PDBe: 3NKE UniProt: Q46896

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Shown in the structure viewer. Drug annotations from DrugDomain.