ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4b0aA4 - ECOD Domain | ECOD

ECOD/Domains/e4b0aA4

e4b0aA4

UID: 001179001

PDB

Range: A:258-340
PDB: 4B0A chain A(all domains)
UniProt: P46677 (all domains)
Gene: TAF1

Molecule: TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 1, LINKER, TATA-BOX-BINDING PROTEIN

3D Structure

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Related Domains

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Classification

AArchitecturea+b two layers(a.11)

XX-groupTBP-like(331)

HH-groupTATA-box binding protein-like(331.1)

TT-groupTATA-box binding protein-like(331.1.1)

FFamilyTBP(331.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Chloride ionCL

+ 1 additive (Glycerol)

GlycerolGOL

Shown in the structure viewer.

Pfam Families

Transcription factor TFIID (or TATA-binding protein, TBP)

ClanCL0407TBP-like

External Links

ECOD PDB View: 4B0A RCSB PDB: 4B0A PDBe: 4B0A UniProt: P46677

Downloads

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Drug annotations from DrugDomain.