ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2o06B2 - ECOD Domain | ECOD

ECOD/Domains/e2o06B2

e2o06B2

UID: 001179650

PDB

Range: B:75-302
PDB: 2O06 chain B(all domains)
UniProt: P19623 (all domains)
Gene: SRM

Molecule: Spermidine synthase

3D Structure

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Related Domains

Browse other domains in Spermine_synth →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilySpermine_synth(2003.1.5.13)

Ligands

in contact, ≤ 4 Å

5'-S-methyl-5'-thioadenosineMTA
drugDrugBank DB02282
PutrescinePUT
drugDrugBank DB01917

Pfam Families

PF01564Spermine_synth

Spermine/spermidine synthase domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2O06 RCSB PDB: 2O06 PDBe: 2O06 UniProt: P19623

Downloads

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Magnesium ion

metal

Shown in the structure viewer. Drug annotations from DrugDomain.