ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3ckkA2 - ECOD Domain | ECOD

ECOD/Domains/e3ckkA2

e3ckkA2

UID: 001179744

PDB

Range: A:7-235
PDB: 3CKK chain A(all domains)
UniProt: Q9UBP6 (all domains)
Gene: METTL1

Molecule: tRNA (guanine-N(7)-)-methyltransferase

3D Structure

Loading viewer...

Related Domains

Browse other domains in Methyltransf_4 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyMethyltransf_4(2003.1.5.23)

Ligands

in contact, ≤ 4 Å

AdemetionineSAM
drugDrugBank DB00118

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer.

Pfam Families

PF02390Methyltransf_4

Putative methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 3CKK RCSB PDB: 3CKK PDBe: 3CKK UniProt: Q9UBP6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.