ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2xdvA2 - ECOD Domain | ECOD

ECOD/Domains/e2xdvA2

e2xdvA2

UID: 001179928

PDB

Range: A:30-90,A:126-339
PDB: 2XDV chain A(all domains)
UniProt: Q8IUF8 (all domains)
Gene: RIOX2

Molecule: MYC-INDUCED NUCLEAR ANTIGEN

3D Structure

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Related Domains

Browse other domains in JmjC_2 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupDouble-stranded beta-helix(10.12)

TT-groupDouble-stranded beta-helix(10.12.1)

FFamilyJmjC_2(10.12.1.40)

Ligands

in contact, ≤ 4 Å

Cadmium ionCD
metal
MANGANESE (II) IONMN
metal
NICKEL (II) IONNI
metal
N-oxalylglycine

Pfam Families

JmjC domain

ClanCL0029Cupin

External Links

ECOD PDB View: 2XDV RCSB PDB: 2XDV PDBe: 2XDV UniProt: Q8IUF8

Downloads

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+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.