ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e4l3tB5 - ECOD Domain | ECOD

ECOD/Domains/e4l3tB5

e4l3tB5

UID: 001183440

PDB

Range: B:554-821
PDB: 4L3T chain B(all domains)
UniProt: Q5JRX3 (all domains)
Gene: PITRM1

Molecule: Presequence protease, mitochondrial

3D Structure

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Related Domains

Browse other domains in M16C_assoc →

Classification

AArchitecturea+b two layers(a.11)

XX-groupLuxS, MPP, ThrRS/AlaRS common domain(309)

HH-groupLuxS, MPP, ThrRS/AlaRS common domain(309.1)

TT-groupLuxS/MPP-like metallohydrolase(309.1.1)

FFamilyM16C_assoc(309.1.1.7)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Acetate, Glycerol)

AcetateACT
DrugBank DB14511
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08367M16C_assoc

Peptidase M16C associated

ClanCL0094Peptidase_ME

External Links

ECOD PDB View: 4L3T RCSB PDB: 4L3T PDBe: 4L3T UniProt: Q5JRX3

Downloads

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